Publications 2013

Alvarez, J. M., & Ordas, R. J. (2013). Stable Agrobacterium-Mediated Transformation of Maritime Pine Based on Kanamycin Selection.
Scientific World Journal. Artn 681792

Asplund, L., Bergkvist, G., Leino, M. W., Westerbergh, A., & Weih, M. (2013). Swedish Spring Wheat Varieties with the Rare High Grain Protein Allele of NAM-B1 Differ in Leaf Senescence and Grain Mineral Content.
Plos One, 8(3). ARTN e59704

Baylis, T., Cierlik, I., Sundberg, E., & Mattsson, J. (2013). SHORT INTERNODES/STYLISH genes, regulators of auxin biosynthesis, are involved in leaf vein development in Arabidopsis thaliana.
New Phytologist, 197(3), 737-750.

Benkhali, J. A., Coppin, E., Brun, S., Peraza-Reyes, L., Martin, T., Dixelius, C., et al. (2013). A Network of HMG-box Transcription Factors Regulates Sexual Cycle in the Fungus Podospora anserina.
Plos Genetics, 9(7). Artn E1003642

Bonosi, L., Ghelardini, L., & Weih, M. (2013). Towards making willows potential bio-resources in the South: Northern Salix hybrids can cope with warm and dry climate when irrigated.
Biomass & Bioenergy, 51, 136-144.

Bulman, L.S., Dick, M., Ganley, R.J., McDougal, R.L., Schwelm, A. and Bradshaw, R.E. (2013) Chapter 22: Dothistroma needle blight.
in: CABI "Infectious Forest Diseases” Eds: G. Nicolotti and P. Gonthier, pp. 435-256

Carlsbecker, A., Sundstrom, J. F., Englund, M., Uddenberg, D., Izquierdo, L., Kvarnheden, A., Vergara-Silva, F. Engstrom, P. (2013). Molecular control of normal and acrocona mutant seed cone development in Norway spruce (Picea abies) and the evolution of conifer ovule-bearing organs.
New Phytologist, 200(1), 261-275.

Coman, D., Gruissem, W., Hennig, L. (2013) Transcript Profiling in Arabidopsis with Genome Tiling Microarrays
In: Methods in Molecular Biology Vol 1067 Tiling Arrays, pp. 35-49

Danisman, S., van Dijk, A. D. J., Bimbo, A., van der Wal, F., Hennig, L., de Folter, S., Angenent, G. C., Immink, R. G. H. (2013). Analysis of functional redundancies within the Arabidopsis TCP transcription factor family.
Journal of Experimental Botany, 64(18), 5673-5685.

De Souza, J., Fuentes, S., Savenkov, E. I., Cuellar, W., & Kreuze, J. F. (2013). The complete nucleotide sequence of sweet potato C6 virus: a carlavirus lacking a cysteine-rich protein.
Archives of Virology, 158(6), 1393-1396.

Derkacheva, M., Steinbach, Y., Wildhaber, T., Mozgova, I., Mahrez, W., Nanni, P., Bischof, S., Gruissem, W., Hennig, L. (2013). Arabidopsis MSI1 connects LHP1 to PRC2 complexes.
Embo Journal, 32(14), 2073-2085.

Fridborg, I., Johansson, A., Lagensjo, J., Leelarasamee, N., Flokova, K., Tarkowska, D., Meijer, J., Bejai, S. (2013). ML3: a novel regulator of herbivory-induced responses in Arabidopsis thaliana.
Journal of Experimental Botany, 64(4), 935-948.

Gaston, A., Perrotte, J., Lerceteau-Kohler, E., Rousseau-Gueutin, M., Petit, A., Hernould, M., Rothan, C., Denoyes, B. (2013). PFRU, a single dominant locus regulates the balance between sexual and asexual plant reproduction in cultivated strawberry.
Journal of Experimental Botany, 64(7), 1837-1848.

Gushchin, V. A., Lukhovitskaya, N. I., Andreev, D. E., Wright, K. M., Taliansky, M. E., Solovyev, A. G., Morozov, S. Y., MacFarlane, S. A. (2013). Dynamic localization of two tobamovirus ORF6 proteins involves distinct organellar compartments.
Journal of General Virology, 94, 230-240.

Hackenberg, T., Juul, T., Auzina, A., Gwizdz, S., Malolepszy, A., Van Der Kelen, K., Dam, S., Bressendorff, S., Lorentzen, A., Roepstorff, P., Nielsen, K. L., Jorgensen, J. E., Hofius, D., Van Breusegem, F., Petersen, M., Andersen, S. U. (2013). Catalase and NO CATALASE ACTIVITY1 Promote Autophagy-Dependent Cell Death in Arabidopsis.
Plant Cell, 25(11), 4616-4626.

Hakenjos, J. P., Bejai, S., Ranftl, Q., Behringer, C., Vlot, A. C., Absmanner, B., Hammes, U., Heinzlmeir, S., Kuster, B., Schwechheimer, C. (2013). ML3 Is a NEDD8-and Ubiquitin-Modified Protein.
Plant Physiology, 163(1), 135-149.

Hallingback, H. R., & Jansson, G. (2013). Genetic information from progeny trials: a comparison between progenies generated by open pollination and by controlled crosses.
Tree Genetics & Genomes, 9(3), 731-740.

Hedman, H., Zhu, T. Q., von Arnold, S., & Sohlberg, J. J. (2013). Analysis of the WUSCHEL-RELATED HOMEOBOX gene family in the conifer picea abies reveals extensive conservation as well as dynamic patterns.
Bmc Plant Biology, 13. Artn 89

Kallman, T., Chen, J., Gyllenstrand, N., & Lagercrantz, U. (2013). A Significant Fraction of 21-Nucleotide Small RNA Originates from Phased Degradation of Resistance Genes in Several Perennial Species.
Plant Physiology, 162(2), 741-754.

Karlgren, A., Gyllenstrand, N., Clapham, D., & Lagercrantz, U. (2013). Flowering Locus T/Terminal Flower1-Like Genes Affect Growth Rhythm and Bud Set in Norway Spruce.
Plant Physiology, 163(2), 792-803.

Karlgren, A., Gyllenstrand, N., Kallman, T., & Lagercrantz, U. (2013). Conserved Function of Core Clock Proteins in the Gymnosperm Norway Spruce (Picea abies L. Karst).
Plos One, 8(3). ARTN e60110

Kasim, W. A., Osman, M. E., Omar, M. N., Abd El-Daim, I. A., Bejai, S., & Meijer, J. (2013). Control of Drought Stress in Wheat Using Plant-Growth-Promoting Bacteria.
Journal of Plant Growth Regulation, 32(1), 122-130.

Kradolfer, D., Hennig, L., & Kohler, C. (2013). Increased Maternal Genome Dosage Bypasses the Requirement of the FIS Polycomb Repressive Complex 2 in Arabidopsis Seed Development.
Plos Genetics, 9(1). Artn E1003163

Kradolfer, D., Wolff, P., Jiang, H., Siretskiy, A., & Kohler, C. (2013). An Imprinted Gene Underlies Postzygotic Reproductive Isolation in Arabidopsis thaliana.
Developmental Cell, 26(5), 525-535.

Landberg, K., Pederson, E. R. A., Viaene, T., Bozorg, B., Friml, J., Jonsson, H., Thelander, M., Sundberg, E. (2013). The Moss Physcomitrella patens Reproductive Organ Development Is Highly Organized, Affected by the Two SHI/STY Genes and by the Level of Active Auxin in the SHI/STY Expression Domain.
Plant Physiology, 162(3), 1406-1419.

Larsson, E., Franks, R. G., & Sundberg, E. (2013). Auxin and the Arabidopsis thaliana gynoecium. Journal of Experimental Botany, 64(9), 2619-2627.

Larsson, H., De Paoli, E., Morgante, M., Lascoux, M., & Gyllenstrand, N. (2013). The Hypomethylated Partial Restriction (HMPR) method reduces the repetitive content of genomic libraries in Norway spruce (Picea abies).
Tree Genetics & Genomes, 9(2), 601-612.

Larsson, H., Kallman, T., Gyllenstrand, N., & Lascoux, M. (2013). Distribution of Long-Range Linkage Disequilibrium and Tajima's D Values in Scandinavian Populations of Norway Spruce (Picea abies).
G3-Genes Genomes Genetics, 3(5), 795-806.

Leke, W. N., Sattar, M. N., Ngane, E. B., Ngeve, J. M., Kvarnheden, A., & Brown, J. K. (2013). Molecular characterization of begomoviruses and DNA satellites associated with okra leaf curl disease in Cameroon.
Virus Research, 174(1-2), 116-125.

Lerceteau-Kohler, E., Schliewen, U., Kopun, T., & Weiss, S. (2013). Genetic variation in brown trout Salmo trutta across the Danube, Rhine, and Elbe headwaters: a failure of the phylogeographic paradigm?
BMC Evolutionary Biology, 13. Artn 176

Lukhovitskaya, N. I., Gushchin V.A., Solovyev, A. G., & Savenkov, E. I. (2013). Making sense of nuclear localization: A zinc-finger protein encoded by a cytoplasmically replicating plant RNA virus acts as a transcription factor: A novel function for a member of large family of viral proteins.
Plant Signaling and Behavior, 8: pii: e25263.

Lukhovitskaya, N. I., Solovieva, A. D., Boddeti, S. K., Thaduri, S., Solovyev, A. G., & Savenkov, E. I. (2013). An RNA Virus-Encoded Zinc-Finger Protein Acts as a Plant Transcription Factor and Induces a Regulator of Cell Size and Proliferation in Two Tobacco Species.
Plant Cell, 25(3), 960-973.

Lukhovitskaya, N. I., Thaduri, S., Garushyants, S. K., Torrance, L., & Savenkov, E. I. (2013). Deciphering the Mechanism of Defective Interfering RNA (DI RNA) Biogenesis Reveals That a Viral Protein and the DI RNA Act Antagonistically in Virus Infection.
Journal of Virology, 87(11), 6091-6103.

Manzoor, S., Niazi, A., Bejai, S., Meijer, J., & Bongcam-Rudloff, E. (2013). Genome Sequence of a Plant-Associated Bacterium, Bacillus amyloliquefaciens Strain UCMB5036.
Genome Announcements, 2(1), 1-2.

Minina, E. A., Filonova, L. H., Fukada, K., Savenkov, E. I., Gogvadze, V., Clapham, D., Sanchez-Vera, V., Suarez, M. F., Zhivotovsky, B., Daniel, G., Smertenko, A., Bozhkov, P. V. (2013). Autophagy and metacaspase determine the mode of cell death in plants.
Journal of Cell Biology, 203(6), 917-927.

Minina, E. A., Filonova, L. H., Daniel, G., Bozhkov, P. V. (2013). Detection and measurement of necrosis in plants.
Methods in Molecular Biology 1004: 229-248.

Minina, E. A., Sanchez-Vera, V., Moschou, P. N., Suarez, M. F., Sundberg, E., Weih, M., Bozhkov, P. V. (2013). Autophagy mediates caloric restriction-induced lifespan extension in Arabidopsis.
Aging Cell, 12(2), 327-329.

Moschou, P. N., Smertenko, A. P., Minina, E. A., Fukada, K., Savenkov, E. I., Robert, S., Hussey, P. J., Bozhkov, P. V. (2013). The Caspase-Related Protease Separase (EXTRA SPINDLE POLES) Regulates Cell Polarity and Cytokinesis in Arabidopsis.
Plant Cell, 25(6), 2171-2186.

Niazi, A., Manzoor, S., Bejai, S., Meijer, J., & Bongcam-Rudloff, E. (2013). Genome sequence of plant associated rhizobacterium Bacillus amyloliquefaciens strain UCMB5033.
EMBnet Journal, 19(A.660), 1-2.

Oide, S., Bejai, S., Staal, J., Guan, N., Kaliff, M., & Dixelius, C. (2013). A novel role of PR2 in abscisic acid (ABA) mediated, pathogen-induced callose deposition in Arabidopsis thaliana.
New Phytologist, 200(4), 1187-1199.

Osman ME, Kasim WA, Omar MN, Abd El-Daim IA, Bejai S, Meijer J (2013) Impact of bacterial priming on some stress tolerance mechanisms and growth of cold stressed wheat seedlings.
International Journal of Plant Biology, 4:e8

Patil, G., & Nicander, B. (2013). Identification of two additional members of the tRNA isopentenyltransferase family in Physcomitrella patens.
Plant Molecular Biology, 82(4-5), 417-426.

Petersson, E. V., Arif, U., Schulzova, V., Krtkova, V., Hajslova, J., Meijer, J., Andersson, H. C., Jonsson, L., Sitbon, F. (2013). Glycoalkaloid and Calystegine Levels in Table Potato Cultivars Subjected to Wounding, Light, and Heat Treatments.
Journal of Agricultural and Food Chemistry, 61(24), 5893-5902.

Petersson, E. V., Nahar, N., Dahlin, P., Broberg, A., Troger, R., Dutta, P. C., Jonsson, L., Sitbon, F. (2013). Conversion of Exogenous Cholesterol into Glycoalkaloids in Potato Shoots, Using Two Methods for Sterol Solubilisation.
Plos One, 8(12). UNSP e82955

Quang, T. H., Gyllenstrand, N., Jansson, G., Griffin, R., von Arnold, S., & Clapham, D. (2013). Evaluating Population Structure by Neutral Markers and Quantitative Genetic Parameters in a Thinned Progeny Trial of Eucalyptus urophylla.
Journal of Tropical Forest Science, 25(3), 350-360.

Sattar, M. N., Kvarnheden, A., Saeed, M., & Briddon, R. W. (2013). Cotton leaf curl disease - an emerging threat to cotton production worldwide.
Journal of General Virology, 94, 695-710.

Shu, H., Gruissem, W., & Hennig, L. (2013). Measuring Arabidopsis Chromatin Accessibility Using DNase I-Polymerase Chain Reaction and DNase I-Chip Assays.
Plant Physiology, 162(4), 1794-1801.

Uddenberg, D., Reimegard, J., Clapham, D., Almqvist, C., von Arnold, S., Emanuelsson, O., Sundström, J. F. (2013). Early Cone Setting in Picea abies acrocona Is Associated with Increased Transcriptional Activity of a MADS Box Transcription Factor.
Plant Physiology, 161(2), 813-823.

Vetukuri. R.R., Åsman, A. K. M., Jahan, S. N., Avrova, A. O., Whisson, S. C. & Dixelius, C. (2013) Phenotypic diversification by gene silencing in Phytophthora plant pathogens
Communicative & Integrative Biology. 6:e25890

Wright, S. A. I., Azarang, M., & Falk, A. B. (2013). Barley lesion mimics, supersusceptible or highly resistant to leaf rust and net blotch.
Plant Pathology, 62(5), 982-992.

Zakizadeh, H., Lutken, H., Sriskandarajah, S., Serek, M., & Muller, R. (2013). Transformation of miniature potted rose (Rosa hybrida cv. Linda) with P (SAG12) -ipt gene delays leaf senescence and enhances resistance to exogenous ethylene.
Plant Cell Reports, 32(2), 195-205.

Zhao, P., Zhou, X. M., Zhang, L. Y., Wang, W., Ma, L. G., Yang, L. B., Peng, X. B., Bozhkov, P. V., Sun, M. X. (2013). A Bipartite Molecular Module Controls Cell Death Activation in the Basal Cell Lineage of Plant Embryos.
Plos Biology, 11(9). Artn E1001655