2016 Publications

Last changed: 14 December 2021

  • Identification of a Differentially Expressed TIR- NBS-LRR Gene in a Major QTL Associated to Leaf Rust Resistance in Salix (2016) Martin T, Rönnberg-Wästljung A-C, Stenlid J, Samils B
    PLOS One 11 e0168776

  • Disease risk assessment of sugar beet root rot using quantitative real-time PCR analysis of Aphanomyces cochlioides in naturally infested soil samples (2016) Almquist C, Persson L, Olsson A, Sundstrom J, Jonsson A
    European Journal of Plant Pathology 145:731-742
  • Multiple effects of Bacillus amyloliquefaciens volatile compounds: plant growth promotion and growth inhibition of phytopathogens (2016) Asari S, Matzen S, Petersen MA, Bejai S, Meijer J. Fems Microbiology Ecology 92(6) 
  • Interferon-gamma-induced p27(KIP1) binds to and targets MYC for proteasome-mediated degradation (2016) Bahram F, Hydbring P, Tronnersjo S, Zakaria SM, Frings O, Fahlen S,  Nilsson H, Goodwin J, von der Lehr N, Su YT, Luscher B, Castell A, Larsson LG
    Oncotarget 7:2837-2854 
  • Rice phytochrome-interacting factor protein OsPIF14 represses OsDREB1B gene expression through an extended N-box and interacts preferentially with the active form of phytochrome B (2016) Cordeiro AM, Figueiredo DD, Tepperman J, Borba AR, Lourenco T, Abreu IA, Ouwerkerk PBF, Quail PH, Oliveira MM, Saibo NJM
    Biochimica Et Biophysica Acta-Gene Regulatory Mechanisms 1859(2):393-404
  • Auxin production in the endosperm drives seed coat development in Arabidopsis (2016) Figueiredo DD, Batista RA, Roszakt PJ, Hennig L, Kohler C
    Elife 2016, 5
  • Bridging the generation gap: communication between maternal sporophyte, female gametophyte and fertilization products (2016) Figueiredo DD, Kohler C
    Current Opinion in Plant Biology 29:16-20
  • An NADPH-Oxidase/Polyamine Oxidase Feedback Loop Controls Oxidative Burst Under Salinity (2016) Gemes K, Kim YJ, Park KY, Moschou PN, Andronis E, Valassaki C, Roussis A, Roubelakis-Angelakis KA
    Plant Physiology 172(3):1418-1431
  • A Structural Bisulfite Assay to Identify DNA Cruciforms (2016) Gentry M, Hennig L
    Molecular Plant 9(9):1328-1336
  • Soil type overrides plant effect on genetic and enzymatic N2O production potential in arable soils (2016) Graf DRH, Zhao M, Jones CM, Hallin S
    Soil Biology & Biochemistry 100:125-128

  • Mitogen-Activated Protein Kinase Kinase 3 Regulates Seed Dormancy in Barley (2016) Nakamura S, Pourkheirandish M, Morishige H, Kubo Y, Nakamura M, Ichimura K, Seo S, Kanamori H, Wu J, Ando T, Hensel G, Sameri M, Stein N, Sato K, Matsumoto T, Yano M, Komatsuda T
    Current Biology 26, 775–781 

  • Association mapping in Salix viminalis L. (Salicaceae) - identification of candidate genes associated with growth and phenology (2016) Hallingback HR, Fogelqvist J, Powers SJ, Turrion-Gomez J, Rossiter R, Amey J, Martin T, Weih M, Gyllenstrand N, Karp A, Lagercrantz U, Hanley SJ, Berlin S, Rönnberg-Wästljung A-C
    Global Change Biology Bioenergy 8(3):670-685
  • Molecular diversity of turncurtoviruses in Iran (2016) Kamali M, Heydarnejad J, Massumi H, Kvarnheden A, Kraberger S, Varsani A
    Archives of Virology 161(3):551-561
  • Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition) (2016) Klionsky DJ, et al. (including Hofius D)
    Autophagy 12:1-222
  • The WD40 Domain Protein MSI1 Functions in a Histone Deacetylase Complex to Fine-Tune Abscisic Acid Signaling (2016) Mehdi S, Derkacheva M, Ramstrom M, Kralemann L, Bergquist J, Hennig L
    Plant Cell 28(1):42-54
  • Silencing S-Adenosyl-L-Methionine Decarboxylase (SAMDC) in Nicotiana tabacum Points at a Polyamine-Dependent Trade-Off between Growth and Tolerance Responses (2016) Mellidou I, Moschou PN, Ioannidis NE, Pankou C, Gemes K, Valassakis C, Andronis EA, Beris D, Haralampidis K, Roussis A et al.
    Frontiers in Plant Science 2016, 7
  • Separase Promotes Microtubule Polymerization by Activating CENP-E-Related Kinesin Kin7 (2016) Moschou PN, Gutierrez-Beltran E, Bozhkov PV, Smertenko A, Karamanoli A,  Matsi T, Kotzabasis K, Constantinidou H-I
    Developmental Cell 37(4):350-361
  • EXTRA SPINDLE POLES (Separase) controls anisotropic cell expansion in Norway spruce (Picea abies) embryos independently of its role in anaphase progression (2016) Moschou PN, Savenkov EI, Minina EA, Fukada K, Reza SH, Gutierrez-Beltran E, Sanchez-Vera V, Suarez MF, Hussey PJ, Smertenko AP, Bozhkov PV
    New Phytologist 212(1):232-243
  • DNA-sequence-specific erasers of epigenetic memory (2016) Mozgova I, Kohler C
    Nature Genetics 48(6):591-592
  • The Large Subunit rDNA Sequence of Plasmodiophora brassicae Does not Contain Intra-species Polymorphism (2016) Schwelm A, Berney C, Dixelius C, Bass D, Neuhauser S
    Protist 167(6):544-554
  • New kid on the block - the clubroot pathogen genome moves the plasmodiophorids into the genomic era (2016) Schwelm A, Dixelius C, Ludwig-Muller J
    European Journal of Plant Pathology 145(3):531-542
  • Evolutionary Origins of Rhizarian Parasites (2016) Sierra R, Canas-Duarte SJ, Burki F, Schwelm A, Fogelqvist J, Dixelius C, Gonzalez-Garcia LN, Gile GH, Slamovits CH, Klopp C, Restrepo S, Arzul I, Pawlowski J
    Molecular Biology and Evolution 33(4):980-983
  • Characterization of Cytokinetic Mutants Using Small Fluorescent Probes (2016) Smertenko A, Moschou P, Zhang LN, Fahy D, Bozhkov P. In: Plant Cell Division: Methods and Protocols. Edited by Caillaud MC, vol. 1370 199-208
  • Overexpression of PaHAP3A stimulates differentiation of ectopic embryos from maturing somatic embryos of Norway spruce (2016) Uddenberg D, Abrahamsson M, von Arnold S
    Tree Genetics & Genomes 12(2)
  • Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain (2016) Villarino GH, Hu QW, Manrique S, Flores-Vergara M, Sehra B, Robles L, Brumos J, Stepanova AN, Colombo L, Sundberg E, Heber S, Franks RG
    Plant Physiology 171(1):42-61
  • Draft genome sequence of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB strain BBA69670 (2016) Wibberg D, Andersson L, Rupp O, Goesmann A, Puhler A, Varrelmann M, Dixelius C, Schluter A
    Journal of Biotechnology 222:11-12
  • Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes (2016) Wibberg D, Andersson L, Tzelepis G, Rupp O, Blom J, Jelonek L, Puhler A, Fogelqvist J, Varrelmann M, Schluter A, Dixelius C
    BMC Genomics 2016, 17
  • Endosperm-based postzygotic hybridization barriers: developmental mechanisms and evolutionary drivers (2016) Lafon-Placette C, Kohler C
    Molecular Ecology 25(11):2620-2629
  • Current plant speciation research: unravelling the processes and mechanisms behind the evolution of reproductive isolation barriers (2016) Lafon-Placette C, Vallejo-Marin M, Parisod C, Abbott RJ, Kohler C
    New Phytologist 209(1):29-33
  • Changes in the DNA methylation pattern of the host male gametophyte of viroid-infected cucumber plants (2016) Castellano M, Martinez G, Marques MC, Moreno-Romero J, Köhler C, Pallas V, Gomez G
    J Exp Bot. 67:5857-5868. (PubMed)
  • Auxin production in the endosperm drives seed coat development in Arabidopsis (2016) Figueiredo DD, Batista RA, Roszak PJ, Hennig, L, Köhler C
    eLIFE, e20542. (PubMed)
  • Identification of a Differentially Expressed TIR- NBS-LRR Gene in a Major QTL Associated to Leaf Rust Resistance in Salix (2016) Martin T, Rönnberg-Wästljung A-C, Stenlid J, Samils, B
    PLOS One 11: e0168776
  • Transcript profiling for early stages during embryo development in Scots pine (2016) Merino I, Abrahamsson M, Sterck L, Craven-Bartle B, Canovas F, von Arnold S
    BMC Plant Biology 16: 255
  • Rapid Evolution of Genomic Imprinting in Two Species of the Brassicaceae (2016) Hatorangan MR, Laenen B, Steige K, Slotte T, Köhler C
    Plant Cell July 27, 2016
  • Norway spruce as a model for studying regulation of somatic embryo development in conifers (2016) von Arnold S, Larsson E, Moscow PN, Zhu P, Uddenberg D, Bozhkov PV In: Vegetative propagation of forest trees (eds) Y-S Park, J M Bonga, H-K Moon  download pdf
  • Diurnal changes in the histone H3 signature H3K9ac|H3K27ac|H3S28p are associated with diurnal gene expression in Arabidopsis (2016) Baerenfaller K, Shu H, Hirsch-Hoffmann M, Fütterer J, Opitz L, Rehrauer H, Hennig L, Gruissem W
    Plant Cell Environment  doi: 10.1111/pce.12811
  • A structural bisulfite assay to identify DNA cruciforms (2016) Gebtry M, Hennig L
    Molecular Plant 10.1016/j.molp.2016.06.003
  • The H3 chaperone function of NASP is conserved in Arabidopsis (2016) Maksimov V, Nakamura M, Wildhaber T, Nanni P, Ramström M, Bergquist J, Hennig L
    Plant Journal doi: 10.1111/tpj.13263
  • H2A deubiquitinases UBP12/13 are part of the Arabidopsis polycomb group protein system (2016) Derkacheva M, Liu S, Figueiredo DD, Gentry M, Mozgova I, Nanni P, Tang M, Mannervik M, Köhler C, Hennig L
    Nature Plants 2:16126
  • Functions in a Histone Deacetylase Complex to Fine-Tune Abscisic Acid Signaling (2016) Mehdi S, Derkacheva M, Ramström M, Kralemann L, Bergquist J, Hennig L
    Plant Cell 28:42-54
  • Genome analysis of the sugar beet pathogen Rhizoctonia solani AG2-2IIIB revealed high numbers in secreted proteins and cell wall degrading enzymes (2016) Wibberg D, Andersson L, Tzelepis G, Rupp O, Blom J, Jelonek L, Pühler A, Fogelqvist J, Varrelmann M, Schlüter A, Dixelius C
    BMC Genomics 17:245
  • Phytophthora infestans Argonaute 1 binds microRNA and small RNAs from effector genes and transposable elements (2016) Åsman AKM, Fogelqvist J, Vetukuri RR, Dixelius C
    New Phytologist March 2016, doi: 10.1111/nph.13946
  • Parental epigenetic asymmetry of PRC2-mediated histone modifications in the Arabidopsis endosperm (2016) Moreno-Romero J, Jiang H, Santos-González J, Köhler C
    EMBO Journal e201593534
  • BRR2a Affects Flowering Time via FLC Splicing (2016) Mahrez W, Shin J, Muñoz-Viana R, Figueiredo DD, Trejo-Arellano MS, Exner V, Siretskiy A, Gruissem W, Köhler C, Hennig L
    PLoS Genetics e1005924
  • H3K36ac Is an Evolutionary Conserved Plant Histone Modification That Marks Active Genes (2016) Mahrez W, Arellano MS, Moreno-Romero J, Nakamura M, Shu H, Nanni P, Köhler C, Gruissem W, Hennig L
    Plant Physiology 170:1566-1577
  • Silencing in sperm cells is directed by RNA movement from the surrounding nurse cell (2016) Martínez G,  Panda K, Köhler C, Slotkin RK
    Nature Plants 2:16030
  • Overexpression of PaHAP3A stimulates differentiation of ectopic embryos on maturing somatic embryos of Norway spruce (2016) Uddenberg D, Abrahamsson M, von Arnold S
    Tree Genetics & Genomes 12:18
  • WUSCHEL-RELATED HOMEOBOX 2 is importants for protoderm and suspensor development in the gymnosperm Norway spruce (2016) Zhu T, Moschou PN, Alvarez JM, Sohlberg JJ, von Arnold S
    BMC Plant Biology 16:19
  • MSI1 functions in a HDAC complex to fine-tune ABA signaling (2016) Mehdi S, Derkacheva M, Ramström M, Kralemann L, Bergquist J, Hennig L
    Plant Cell pii: TPC2015-00763-RA. (Epub ahead of print)

Contact

bjorn.nicander@slu.se, 018-673309